Posts by Collection

publications

talks

Lightweight virtualization using Docker

Published:

I gave a short introduction to using Docker for virtualizing applications in computational biology based on my experiences with EAGER.

Modern computational methods in ancient DNA analysis

Published:

I am jointly organizing a workshop on modern computational methods in ancient DNA analysis with Judith Neukamm, Gabriel Renaud and Kay Nieselt. See http://gcb2017.de/?page_id=328 for more details.

teaching

Softwareengineering

Undergraduate course, Eberhard Karls Universität Tübingen, 2014

Supervised a student programming project in applied bioinformatics. Our supervised students developed a small Java based application to visualize haplotype data provided by Günter Jäger and me.

Advanced Transcriptomics

Graduate course, Eberhard Karls Universität Tübingen, 2014

I was a teaching assistant for the graduate course Advanced Transcriptomics, supervising students projects, grading weekly assignments and offering a weekly problem session for different topics in sequencing technologies, RNA-/DNA-Seq, Transcriptome assembly and differential expression analysis.

Advanced Transcriptomics: Practical Course

Graduate course, Eberhard Karls Universität Tübingen, 2014

I was a teaching assistant for the graduate course Practical Transcriptomics, taught in the semester break in March 2015, supervising student projects and a two weeks practical hands-on course in practical aspects of RNA-Seq, DNA-Seq and other types of analysis.

Basics of Bioinformatics

Undergraduate course, Eberhard Karls Universität Tübingen, 2015

Supervised the basics of Bioinformatics (“Grundlagen der Bioinformatik”) course as a teaching assistant.

Softwareengineering

Undergraduate course, Eberhard Karls Universität Tübingen, 2015

Co-Supervised a student programming project in applied bioinformatics. Students had to develop an own Java application to visualize example data provided by André Hennig and me.

Bioinformatics I

Graduate course, Eberhard Karls Universität Tübingen, 2015

Co-Supervised as a teaching assistant the lecture Bioinformatics I, covering many aspects of modern sequence Bioinformatics applications, such as mapping, assembly and specifically focusing on theoretical aspects behind these methods.

Genome Analysis Workshop

Workshop, Max-Planck-Institute for the Science of Human History, 2016

Organized a workshop on genome analysis tools in the context of ancient DNA together with Dr. Stephan Schiffels and Stephen Clayton.

mitoBench / mitoDB Workshop

Workshop, Max-Planck-Institute for the Science of Human History, 2017

Organized a collaborative meeting for contributing institutions and researchers in the field of mitochondrial forensics and population genetics jointly with Dr. Wolfgang Haak, Prof. Dr. Kay Nieselt and Judith Neukamm.

Advanced Transcriptomics: Practical Course

Graduate course, Eberhard Karls Universität Tübingen, 2017

Co-Supervised the practical course for the Advanced Transcriptomics lecture, taught in the semester break in March 2017.

Seminar: Algorithms in Bioinformatics

Graduate course, Eberhard Karls Universität Tübingen, 2017

(Co-) Supervised the seminar “Algorithms in Bioinformatics” for Bioinformatics Master students. Topics included third generation sequencing technologies, e.g. PacBio, NanoPore and algorithmical challenges with these new data types.