Bioinformatics

Reproducible, portable, and effcient ancient genome reconstruction with nf-core/eager

The broadening utilisation of ancient DNA to address archaeological, palaeontological, and biological questions is resulting in a rising diversity in the size of laboratories and scale of analyses being performed. In the context of this heterogeneous …

DamageProfiler: Fast damage pattern calculation for ancient DNA

In ancient DNA research, the authentication of ancient samples based on specific features remains a crucial step in data analysis. Because of this central importance, researchers lacking deeper programming knowledge should be able to run a basic …

Scalable, reproducible bioinformatics workflows using Nextflow & nf-core

Reproducible, portable, and effcient ancient genome reconstruction with nf-core/eager

The broadening utilisation of ancient DNA (aDNA) to address archaeological, palaeontological, and biological questions is resulting in a rising diversity in the size of laboratories and scale of analyses being performed. In the context of this …

Scalable, reproducible bioinformatics workflows using Nextflow & nf-core

Ten simple rules for providing effective bioinformatics research support

Life scientists are increasingly turning to high-throughput sequencing technologies in their research programs, owing to the enormous potential of these methods. In a parallel manner, the number of core facilities that provide bioinformatics support …

Scalable, reproducible bioinformatics workflows using Nextflow & nf-core

Migrating legacy workflows to Nextflow

Many researchers and institutions face similar issues: Having in-house legacy workflows written in bash or other formats and now facing issues with reproducibility, maintenance of these pipelines and the increasing computational demands poses severe …

BigData analytics with Nextflow and nf-core

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

nf-core: Community built bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …