Nextflow

MHCquant: Automated and reproducible data analysis for immunopeptidomics

Personalized multi-peptide vaccines are currently discussed intensively for tumor immunotherapy. In order to identify epitopes - short, immunogenic peptides - suitable for eliciting a tumor-specific immune response, human leukocyte antigen …

Migrating legacy workflows to Nextflow

Many researchers and institutions face similar issues: Having in-house legacy workflows written in bash or other formats and now facing issues with reproducibility, maintenance of these pipelines and the increasing computational demands poses severe …

BigData analytics with Nextflow and nf-core

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

Challenges of big data integration in the life sciences

Big data has been reported to be revolutionizing many areas of life, including science. It summarizes data that is unprecedentedly large, rapidly generated, heterogeneous, and hard to accurately interpret. This availability has also brought new …

nf-core: Community built bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

nf-core: Community built bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

BigData Analytics with Nextflow & nf-core

Die Standardisierung, Portabilität und Reproduzierbarkeit von Analysemethoden ist nach wie vor ein bekanntes Problem in der angewandten Informatik und hierbei insbesondere in den Lebenswissenschaften. Analysetools sind oftmals auf spezifische …

Affordable WGS for personal usage (part 1)

Analyzing my own genome data from DanteLabs WGZ service.

nf-core: Community curated bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. Bioinformatic analysis pipelines are often designed for execution on-premise, and this inevitably leads to a level …

Complex Genomics Analysis Pipelines made Simple with NextFlow & AWS Batch

The science of genomics is increasingly contributing to the sort of insights which lead to longer and healthier lives for us all. But the computational pipelines needed to support accurate and timely analysis of huge quantities of genomic data are …