Nextflow

Affordable WGS for personal usage (part 1)

Analyzing my own genome data from DanteLabs WGZ service.

nf-core: Community curated bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. Bioinformatic analysis pipelines are often designed for execution on-premise, and this inevitably leads to a level …

Complex Genomics Analysis Pipelines made Simple with NextFlow & AWS Batch

The science of genomics is increasingly contributing to the sort of insights which lead to longer and healthier lives for us all. But the computational pipelines needed to support accurate and timely analysis of huge quantities of genomic data are …

nf-core: Community-based best practice pipeline development in Nextflow

A basic introduction into nf-core and the aims and goals behind the project to make pipeline development a community mission across multiple bionformatics core units across the globe using Nextflow.

bioinfo-core teleconference on Nextflow and nf-core

After the ISMB workshop in Chicago, I gave a teleconference talk running a demo on Nextflow and nf-core. Video, Slides and Webpage available here.

nf-core: Community-based best practice pipeline development in Nextflow

I gave a talk about our efforts in the nf-core project on making pipeline development a community mission across multiple bionformatics core units across the globe using Nextflow.

EAGER2: A modern framework for aDNA analysis

Ancient DNA datasets generated today are getting bigger and bigger. I introduced the start of a community pipeline called EAGER2 to accommodate life-science researchers with an interest in aDNA to collaborate on developing a reproducible and …

nf-core: Community-based best practice pipeline development in Nextflow

Introducing the efforts in the nf-core project and in containerizing applications for genomics workflows across multiple bioinformatics core units.

nf-core

Community-based best-practice workflows in Nextflow

Running nf-co.re pipelines with AWSBatch

How to run AWSBatch with NF-Core pipelines using Nextflow.