NF-Core

Migrating legacy workflows to Nextflow

Many researchers and institutions face similar issues: Having in-house legacy workflows written in bash or other formats and now facing issues with reproducibility, maintenance of these pipelines and the increasing computational demands poses severe …

BigData analytics with Nextflow and nf-core

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

nf-core: Community built bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

nf-core: Community built bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. In the past, bioinformatic analysis pipelines have often been designed to work on-premise, deeply integrated into …

BigData Analytics with Nextflow & nf-core

Die Standardisierung, Portabilität und Reproduzierbarkeit von Analysemethoden ist nach wie vor ein bekanntes Problem in der angewandten Informatik und hierbei insbesondere in den Lebenswissenschaften. Analysetools sind oftmals auf spezifische …

Affordable WGS for personal usage (part 1)

Analyzing my own genome data from DanteLabs WGZ service.

nf-core: Community curated bioinformatics pipelines

The standardization, portability, and reproducibility of analysis pipelines is a renowned problem within the bioinformatics community. Bioinformatic analysis pipelines are often designed for execution on-premise, and this inevitably leads to a level …

Complex Genomics Analysis Pipelines made Simple with NextFlow & AWS Batch

The science of genomics is increasingly contributing to the sort of insights which lead to longer and healthier lives for us all. But the computational pipelines needed to support accurate and timely analysis of huge quantities of genomic data are …

nf-core: Community-based best practice pipeline development in Nextflow

A basic introduction into nf-core and the aims and goals behind the project to make pipeline development a community mission across multiple bionformatics core units across the globe using Nextflow.

bioinfo-core teleconference on Nextflow and nf-core

After the ISMB workshop in Chicago, I gave a teleconference talk running a demo on Nextflow and nf-core. Video, Slides and Webpage available here.